Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs13230609 chr7:32790230 A/G 9.58E-5 502 31.45 31.57 31.97 KM Plot
THCA rs13230694 chr7:32790203 C/T 9.81E-5 502 31.47 31.47 31.97 KM Plot
THCA rs13391864 chr2:234362816 C/T 9.09E-7 501 31.73 29.67 26.45 KM Plot
THCA rs13392183 chr2:234341300 G/A 9.09E-7 502 31.67 31.03 26.45 KM Plot
THCA rs13393578 chr2:234358444 C/T 1.0E-6 500 31.72 28.28 26.45 KM Plot
THCA rs13403169 chr2:234338521 G/A 9.26E-7 502 31.6 31.57 26.45 KM Plot
THCA rs13406462 chr2:234345200 G/A 9.59E-7 500 31.7 31.03 26.45 KM Plot
THCA rs13406655 chr2:234345406 G/T 9.56E-7 501 31.6 31.43 26.45 KM Plot
THCA rs13438889 chr8:60173513 C/T 4.75E-5 503 32.1 28.02 23 KM Plot
THCA rs138023890 chr8:58050288 A/ATG 1.94E-6 497 31.6 30.07 31.77 KM Plot
THCA rs138333408 chr2:86943367 A/G 3.32E-9 499 32.27 27.7 14.73 KM Plot
THCA rs138827289 chr7:16467144 CATA/C 3.7E-5 490 31.38 32.6 33.48 KM Plot
THCA rs138920024 chr6:133140012 T/TTG 0 503 31.43 35.6 8.1 KM Plot
THCA rs1391029 chr3:139267359 A/T 4.83E-5 500 31.53 33.97 19.32 KM Plot
THCA rs1391030 chr3:139267407 C/G 4.83E-5 500 31.53 33.97 19.32 KM Plot